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vivaldi: Viral Variant Location and Diversity

Analysis of minor alleles in Illumina sequencing data of viral genomes. Functions in 'vivaldi' primarily operate on vcf files.

Version: 1.0.1
Depends: R (≥ 2.10)
Imports: dplyr (≥ 1.0.2), ggplot2 (≥ 3.3.2), glue (≥ 1.4.2), magrittr (≥ 2.0.1), plotly (≥ 4.10.0), seqinr (≥ 4.2-8), tidyr (≥ 1.1.2), tidyselect (≥ 1.1.2), vcfR (≥ 1.12.0)
Suggests: kableExtra, knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2023-03-21
DOI: 10.32614/CRAN.package.vivaldi
Author: Marissa Knoll [aut], Katherine Johnson [aut], Megan Hockman [aut], Eric Borenstein [aut], Mohammed Khalfan [aut], Elodie Ghedin [aut], David Gresham [aut, cre, cph]
Maintainer: David Gresham <dg107 at nyu.edu>
BugReports: https://github.com/GreshamLab/vivaldi/issues
License: MIT + file LICENSE
URL: https://github.com/GreshamLab/vivaldi
NeedsCompilation: no
Citation: vivaldi citation info
Materials: README
CRAN checks: vivaldi results

Documentation:

Reference manual: vivaldi.pdf
Vignettes: vignette

Downloads:

Package source: vivaldi_1.0.1.tar.gz
Windows binaries: r-devel: vivaldi_1.0.1.zip, r-release: vivaldi_1.0.1.zip, r-oldrel: vivaldi_1.0.1.zip
macOS binaries: r-release (arm64): vivaldi_1.0.1.tgz, r-oldrel (arm64): vivaldi_1.0.1.tgz, r-release (x86_64): vivaldi_1.0.1.tgz, r-oldrel (x86_64): vivaldi_1.0.1.tgz
Old sources: vivaldi archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=vivaldi to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.