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Analysis of minor alleles in Illumina sequencing data of viral genomes. Functions in 'vivaldi' primarily operate on vcf files.
| Version: | 1.0.1 |
| Depends: | R (≥ 2.10) |
| Imports: | dplyr (≥ 1.0.2), ggplot2 (≥ 3.3.2), glue (≥ 1.4.2), magrittr (≥ 2.0.1), plotly (≥ 4.10.0), seqinr (≥ 4.2-8), tidyr (≥ 1.1.2), tidyselect (≥ 1.1.2), vcfR (≥ 1.12.0) |
| Suggests: | kableExtra, knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2023-03-21 |
| DOI: | 10.32614/CRAN.package.vivaldi |
| Author: | Marissa Knoll [aut], Katherine Johnson [aut], Megan Hockman [aut], Eric Borenstein [aut], Mohammed Khalfan [aut], Elodie Ghedin [aut], David Gresham [aut, cre, cph] |
| Maintainer: | David Gresham <dg107 at nyu.edu> |
| BugReports: | https://github.com/GreshamLab/vivaldi/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/GreshamLab/vivaldi |
| NeedsCompilation: | no |
| Citation: | vivaldi citation info |
| Materials: | README |
| CRAN checks: | vivaldi results |
| Reference manual: | vivaldi.pdf |
| Vignettes: |
vignette |
| Package source: | vivaldi_1.0.1.tar.gz |
| Windows binaries: | r-devel: vivaldi_1.0.1.zip, r-release: vivaldi_1.0.1.zip, r-oldrel: vivaldi_1.0.1.zip |
| macOS binaries: | r-release (arm64): vivaldi_1.0.1.tgz, r-oldrel (arm64): vivaldi_1.0.1.tgz, r-release (x86_64): vivaldi_1.0.1.tgz, r-oldrel (x86_64): vivaldi_1.0.1.tgz |
| Old sources: | vivaldi archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.