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agvgd: An R Implementation of the 'Align-GVGD' Method
'Align-GVGD' ('A-GVGD') is a method to predict the impact of
'missense' substitutions based on the properties of amino acid side
chains and protein multiple sequence alignments
<doi:10.1136/jmg.2005.033878>. 'A-GVGD' is an extension of the original
'Grantham' distance to multiple sequence alignments. This package
provides an alternative R implementation to the web version found on
<http://agvgd.hci.utah.edu/>.
| Version: |
0.1.2 |
| Depends: |
R (≥ 2.10) |
| Imports: |
crayon, dplyr, glue, grantham, magrittr, purrr, rlang, seqinr, stringr, tibble, tidyr, vctrs |
| Suggests: |
rmarkdown, covr, testthat (≥ 3.0.0) |
| Published: |
2022-09-10 |
| DOI: |
10.32614/CRAN.package.agvgd |
| Author: |
Ramiro Magno 
[aut, cre],
Isabel Duarte
[aut],
Ana-Teresa Maia
[aut],
CINTESIS [cph, fnd] |
| Maintainer: |
Ramiro Magno <ramiro.magno at gmail.com> |
| BugReports: |
https://github.com/maialab/agvgd/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://maialab.org/agvgd/, https://github.com/maialab/agvgd |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| In views: |
Omics |
| CRAN checks: |
agvgd results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=agvgd
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.