The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

agvgd: An R Implementation of the 'Align-GVGD' Method

'Align-GVGD' ('A-GVGD') is a method to predict the impact of 'missense' substitutions based on the properties of amino acid side chains and protein multiple sequence alignments <doi:10.1136/jmg.2005.033878>. 'A-GVGD' is an extension of the original 'Grantham' distance to multiple sequence alignments. This package provides an alternative R implementation to the web version found on <http://agvgd.hci.utah.edu/>.

Version: 0.1.2
Depends: R (≥ 2.10)
Imports: crayon, dplyr, glue, grantham, magrittr, purrr, rlang, seqinr, stringr, tibble, tidyr, vctrs
Suggests: rmarkdown, covr, testthat (≥ 3.0.0)
Published: 2022-09-10
DOI: 10.32614/CRAN.package.agvgd
Author: Ramiro Magno ORCID iD [aut, cre], Isabel Duarte ORCID iD [aut], Ana-Teresa Maia ORCID iD [aut], CINTESIS [cph, fnd]
Maintainer: Ramiro Magno <ramiro.magno at gmail.com>
BugReports: https://github.com/maialab/agvgd/issues
License: MIT + file LICENSE
URL: https://maialab.org/agvgd/, https://github.com/maialab/agvgd
NeedsCompilation: no
Materials: README NEWS
In views: Omics
CRAN checks: agvgd results

Documentation:

Reference manual: agvgd.pdf

Downloads:

Package source: agvgd_0.1.2.tar.gz
Windows binaries: r-devel: agvgd_0.1.2.zip, r-release: agvgd_0.1.2.zip, r-oldrel: agvgd_0.1.2.zip
macOS binaries: r-release (arm64): agvgd_0.1.2.tgz, r-oldrel (arm64): agvgd_0.1.2.tgz, r-release (x86_64): agvgd_0.1.2.tgz, r-oldrel (x86_64): agvgd_0.1.2.tgz
Old sources: agvgd archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=agvgd to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.