inDAGO: A GUI for Dual and Bulk RNA-Sequencing Analysis

A 'shiny' app that supports both dual and bulk RNA-seq, with the dual RNA-seq functionality offering the flexibility to perform either a sequential approach (where reads are mapped separately to each genome) or a combined approach (where reads are aligned to a single merged genome). The user-friendly interface automates the analysis process, providing step-by-step guidance, making it easy for users to navigate between different analysis steps, and download intermediate results and publication-ready plots.

Version:	1.0.0
Imports:	bigtabulate, BiocGenerics, Biostrings, bsicons, bslib, callr, checkmate, data.table, dplyr, DT, edgeR, fs, ggplot2, ggrepel, grDevices, heatmaply, Hmisc, htmltools, HTSFilter, limma, magrittr, matrixStats, memuse, methods, paletteer, parallel, pheatmap, plotly, R.devices, readr, reshape2, Rfastp, rintrojs, Rsamtools, Rsubread, rtracklayer, S4Vectors, seqinr, shiny, shinycssloaders, shinyFiles, shinyjs, shinyWidgets, ShortRead, spsComps, stats, tibble, tidyr, tools, upsetjs, UpSetR, utils, XVector
Suggests:	testthat (≥ 3.0.0)
Published:	2025-07-05
DOI:	10.32614/CRAN.package.inDAGO
Author:	Carmine Fruggiero [aut, cre], Gaetano Aufiero [aut]
Maintainer:	Carmine Fruggiero <fruggierocarmine3 at gmail.com>
BugReports:	https://github.com/inDAGOverse/inDAGO/issues
License:	GPL (≥ 3)
URL:	https://github.com/inDAGOverse/inDAGO
NeedsCompilation:	no
CRAN checks:	inDAGO results

Documentation:

Reference manual:

inDAGO.pdf

Downloads:

Package source:	inDAGO_1.0.0.tar.gz
Windows binaries:	r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries:	r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available

Linking:

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