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BiocManager: Access the Bioconductor Project Package Repository

A convenient tool to install and update Bioconductor packages.

Version: 1.30.25
Imports: utils
Suggests: BiocVersion, BiocStyle, remotes, rmarkdown, testthat, withr, curl, knitr
Published: 2024-08-28
DOI: 10.32614/CRAN.package.BiocManager
Author: Martin Morgan ORCID iD [aut], Marcel Ramos ORCID iD [aut, cre]
Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>
BugReports: https://github.com/Bioconductor/BiocManager/issues
License: Artistic-2.0
URL: https://bioconductor.github.io/BiocManager/
NeedsCompilation: no
Materials: README NEWS
CRAN checks: BiocManager results

Documentation:

Reference manual: BiocManager.pdf
Vignettes: Installing and Managing Bioconductor Packages (source, R code)

Downloads:

Package source: BiocManager_1.30.25.tar.gz
Windows binaries: r-devel: BiocManager_1.30.25.zip, r-release: BiocManager_1.30.25.zip, r-oldrel: BiocManager_1.30.25.zip
macOS binaries: r-release (arm64): BiocManager_1.30.25.tgz, r-oldrel (arm64): BiocManager_1.30.25.tgz, r-release (x86_64): BiocManager_1.30.25.tgz, r-oldrel (x86_64): BiocManager_1.30.25.tgz
Old sources: BiocManager archive

Reverse dependencies:

Reverse depends: annaffy
Reverse imports: affy, affylmGUI, AnnotationHub, AnnotationHubData, AnVIL, AnVILPublish, anyLib, aroma.core, BayesianPlatformDesignTimeTrend, BiocCheck, BiocPkgTools, BiocStyle, biocthis, biocViews, CALANGO, CAMML, ccmap, ChIPanalyser, Cogito, crisprVerse, CytoMethIC, EDASeq, EnrichmentBrowser, esATAC, EuPathDB, ExperimentHub, ExperimentHubData, FastUtils, flowGate, gcrma, gDRstyle, geneExpressionFromGEO, GenomicScores, ggm, GOTHiC, gpcp, HubPub, influential, iSEEhub, librarian, lipidomeR, mariner, mergen, MiRaGE, NMF, oligoClasses, OrganismDbi, pkgndep, rawDiag, RCPA, RforProteomics, riskmetric, rjtools, rvcheck, rworkflows, SCRIP, scTensor, seeker, SeqGate, SingleCellSignalR, tinyarray, umiAnalyzer, webbioc
Reverse suggests: alevinQC, AlphaMissenseR, AnnotationForge, autonomics, available, BatchQC, bbl, BeeBDC, BiocHubsShiny, BSgenome, bulkAnalyseR, CaDrA, CAEN, celda, celldex, cellmigRation, CEMiTool, ChemmineOB, ChemmineR, ChIPpeakAnno, circRNAprofiler, clusterProfiler, clustifyr, CNVScope, cola, concordexR, csaw, cypress, dearseq, deepdep, DESeq2, devtools, discourseGT, DMRScan, EasyCellType, ExpImage, famat, FGNet, FieldEffectCrc, gDRutils, GDSArray, genBaRcode, GeneSelectR, GenomicSuperSignature, ggsector, gmoviz, GOSemSim, goSorensen, GrafGen, HiCDOC, HMP16SData, HMP2Data, homosapienDEE2CellScore, ibawds, InPAS, InteractiveComplexHeatmap, KEGGlincs, koinar, LCMSQA, MAGAR, MAGeCKFlute, maGUI, manynet, mastR, mdp, metaseqR2, methylKit, MicrobiotaProcess, MiscMetabar, MOCHA, multiclassPairs, NADfinder, ObMiTi, orthGS, orthos, pacman, pathwayTMB, PCMBase, pcutils, pipeFrame, pkggraph, pliman, preciseTAD, Prostar, qsea, RAMClustR, RCAS, RcmdrPlugin.BiclustGUI, rebook, recount, recoup, RegEnrich, regionReport, renv, RepeatedHighDim, rGenomeTracksData, rgoslin, rGREAT, rhinotypeR, RNAseqData.HNRNPC.bam.chr14, rsconnect, Rvisdiff, SCBN, scoup, scRepertoire, scRNAseq, seqCAT, seqsetvis, sesame, SGCP, simona, simplifyEnrichment, sketchR, snapcount, spatialLIBD, spatzie, SpectralTAD, spiky, splatter, SRTsim, sSNAPPY, SUITOR, survcomp, switchr, SynMut, TcGSA, TENET.AnnotationHub, tidybulk, tidyHeatmap, tigre, TnT, tripr, updateme, VCFArray, wrswoR

Linking:

Please use the canonical form https://CRAN.R-project.org/package=BiocManager to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.