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BeeBDC: Occurrence Data Cleaning

Flags and checks occurrence data that are in Darwin Core format. The package includes generic functions and data as well as some that are specific to bees. This package is meant to build upon and be complimentary to other excellent occurrence cleaning packages, including 'bdc' and 'CoordinateCleaner'. This package uses datasets from several sources and particularly from the Discover Life Website, created by Ascher and Pickering (2020). For further information, please see the original publication and package website. Publication - Dorey et al. (2023) <doi:10.1101/2023.06.30.547152> and package website - Dorey et al. (2023) <https://github.com/jbdorey/BeeBDC>.

Version: 1.2.1
Depends: R (≥ 2.10)
Imports: circlize, CoordinateCleaner, cowplot, dplyr, forcats, ggplot2, ggspatial, here, igraph, lubridate, mgsub, openxlsx, paletteer, readr, rnaturalearth, sf, stringr, tidyselect
Suggests: bdc, BiocManager, classInt, ComplexHeatmap, countrycode, devtools, emld, formatR, galah, htmltools, htmlwidgets, httr, janitor, knitr, leaflet, magrittr, pkgdown, plotly, prettydoc, purrr, R.utils, renv, rgnparser, rlang, rmarkdown, rmdformats, rnaturalearthdata, rvest, taxadb, terra, testthat, tidyr, utils, xml2
Published: 2024-11-04
DOI: 10.32614/CRAN.package.BeeBDC
Author: James B. Dorey ORCID iD [aut, cre, cph], Robert L. O'Reilly ORCID iD [aut], Silas Bossert ORCID iD [aut], Erica E. Fischer ORCID iD [aut]
Maintainer: James B. Dorey <jbdorey at me.com>
BugReports: https://github.com/jbdorey/BeeBDC/issues
License: GPL (≥ 3)
URL: https://jbdorey.github.io/BeeBDC/ https://github.com/jbdorey/BeeBDC
NeedsCompilation: no
Language: en-gb
Citation: BeeBDC citation info
Materials: README NEWS
CRAN checks: BeeBDC results

Documentation:

Reference manual: BeeBDC.pdf
Vignettes: BeeBDC vignette (source, R code)
Basic workflow (source, R code)

Downloads:

Package source: BeeBDC_1.2.1.tar.gz
Windows binaries: r-devel: BeeBDC_1.2.1.zip, r-release: BeeBDC_1.2.1.zip, r-oldrel: BeeBDC_1.2.1.zip
macOS binaries: r-release (arm64): BeeBDC_1.1.1.tgz, r-oldrel (arm64): not available, r-release (x86_64): BeeBDC_1.2.1.tgz, r-oldrel (x86_64): BeeBDC_1.2.1.tgz
Old sources: BeeBDC archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.