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Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).
Version: | 1.2.7 |
Depends: | R (≥ 3.4) |
Imports: | methods, RColorBrewer, ape, ggnetwork, ggplot2, ggraph, igraph, network, phangorn, stringdist, visNetwork, reshape2, S4Vectors, shiny, ggtree, dplyr, VennDiagram, futile.logger, future, future.apply, tools, ShortRead, Biostrings |
Suggests: | BiocManager, testthat, knitr, rmarkdown |
Published: | 2023-12-11 |
DOI: | 10.32614/CRAN.package.genBaRcode |
Author: | Lars Thielecke |
Maintainer: | Lars Thielecke <lars.thielecke at tu-dresden.de> |
License: | LGPL-2 | LGPL-2.1 | LGPL-3 [expanded from: LGPL] |
NeedsCompilation: | no |
CRAN checks: | genBaRcode results |
Reference manual: | genBaRcode.pdf |
Vignettes: |
Introduction to the genBaRcode GUI Introduction to genBaRcode |
Package source: | genBaRcode_1.2.7.tar.gz |
Windows binaries: | r-devel: genBaRcode_1.2.7.zip, r-release: genBaRcode_1.2.7.zip, r-oldrel: genBaRcode_1.2.7.zip |
macOS binaries: | r-release (arm64): genBaRcode_1.2.7.tgz, r-oldrel (arm64): genBaRcode_1.2.7.tgz, r-release (x86_64): genBaRcode_1.2.7.tgz, r-oldrel (x86_64): genBaRcode_1.2.7.tgz |
Old sources: | genBaRcode archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.