SingleCellComplexHeatMap: Complex Heatmaps for Single Cell Expression Data with Dual Information Display

Creates complex heatmaps for single cell RNA-seq data that simultaneously display gene expression levels (as color intensity) and expression percentages (as circle sizes). Supports gene grouping, cell type annotations, and time point comparisons. Built on top of 'ComplexHeatmap' and integrates with 'Seurat' objects. For more details see Gu (2022) <doi:10.1002/imt2.43> and Hao (2024) <doi:10.1038/s41587-023-01767-y>.

Version:	0.1.2
Depends:	R (≥ 4.0.0)
Imports:	ComplexHeatmap (≥ 2.10.0), Seurat (≥ 4.0.0), dplyr (≥ 1.0.0), tidyr (≥ 1.0.0), RColorBrewer, circlize (≥ 0.4.0), grid, grDevices, stats, magrittr
Suggests:	testthat (≥ 3.0.0), knitr, rmarkdown, viridis, devtools, BiocManager, ggsci, SeuratObject
Published:	2025-06-28
DOI:	10.32614/CRAN.package.SingleCellComplexHeatMap
Author:	XueCheng Fang [aut, cre]
Maintainer:	XueCheng Fang <xuecheng328 at gmail.com>
BugReports:	https://github.com/FanXuRong/SingleCellComplexHeatMap/issues
License:	MIT + file LICENSE
URL:	https://github.com/FanXuRong/SingleCellComplexHeatMap
NeedsCompilation:	no
Materials:	README
CRAN checks:	SingleCellComplexHeatMap results

Documentation:

Reference manual:	SingleCellComplexHeatMap.pdf
Vignettes:	Getting Started with SingleCellComplexHeatMap (source, R code)

Downloads:

Package source:	SingleCellComplexHeatMap_0.1.2.tar.gz
Windows binaries:	r-devel: SingleCellComplexHeatMap_0.1.2.zip, r-release: not available, r-oldrel: not available
macOS binaries:	r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): SingleCellComplexHeatMap_0.1.2.tgz, r-oldrel (x86_64): SingleCellComplexHeatMap_0.1.2.tgz

Linking:

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