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Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.
| Version: | 3.7.2 |
| Depends: | R (≥ 4.1.0), ggplot2 |
| Imports: | tidyr, reshape2, magrittr, jointseg, shiny, RCurl, foreach, GenomicInteractions, Matrix, OpenImageR, biomaRt, matrixStats, plyr, data.table, dplyr, doParallel, stringr, rtracklayer, Hmisc |
| Suggests: | knitr, remotes, pwr, ComplexHeatmap, rmarkdown, HiCseg, igraph, visNetwork, circlize, plotly, InteractionSet, GenomicRanges, GenomicFeatures, IRanges, rslurm, shinythemes, shinycssloaders, DT, logging, heatmaply, S4Vectors, BiocManager, shinyjs, htmltools, htmlwidgets, GenomeInfoDb, BSgenome.Hsapiens.UCSC.hg19, tibble, smoothie |
| Published: | 2022-03-30 |
| DOI: | 10.32614/CRAN.package.CNVScope |
| Author: | James Dalgeish, Yonghong Wang, Jack Zhu, Paul Meltzer |
| Maintainer: | James Dalgleish <james.dalgleish at nih.gov> |
| BugReports: | https://github.com/jamesdalg/CNVScope/issues/ |
| License: | BSD_3_clause + file LICENSE |
| URL: | https://github.com/jamesdalg/CNVScope/ |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | CNVScope results |
| Reference manual: | CNVScope.pdf |
| Vignettes: |
Additional Visualization Examples Creating the TARGET Input matrix from public data Linear Regression/Postprocess Power Analysis |
| Package source: | CNVScope_3.7.2.tar.gz |
| Windows binaries: | r-devel: CNVScope_3.7.2.zip, r-release: CNVScope_3.7.2.zip, r-oldrel: CNVScope_3.7.2.zip |
| macOS binaries: | r-release (arm64): CNVScope_3.7.2.tgz, r-oldrel (arm64): CNVScope_3.7.2.tgz, r-release (x86_64): CNVScope_3.7.2.tgz, r-oldrel (x86_64): CNVScope_3.7.2.tgz |
| Old sources: | CNVScope archive |
Please use the canonical form https://CRAN.R-project.org/package=CNVScope to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.