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Provides a framework to perform Non-negative Matrix Factorization (NMF). The package implements a set of already published algorithms and seeding methods, and provides a framework to test, develop and plug new/custom algorithms. Most of the built-in algorithms have been optimized in C++, and the main interface function provides an easy way of performing parallel computations on multicore machines.
| Version: | 0.28 |
| Depends: | R (≥ 3.0.0), methods, utils, registry, rngtools (≥ 1.2.3), cluster |
| Imports: | graphics, stats, stringr (≥ 1.0.0), digest, grid, grDevices, gridBase, colorspace, RColorBrewer, foreach, doParallel, ggplot2, reshape2, Biobase, codetools, BiocManager |
| Suggests: | fastICA, doMPI, bigmemory (≥ 4.2), synchronicity (≥ 1.3.2), corpcor, xtable, devtools, knitr, RUnit |
| Published: | 2024-08-22 |
| DOI: | 10.32614/CRAN.package.NMF |
| Author: | Renaud Gaujoux [aut], Cathal Seoighe [aut], Nicolas Sauwen [cre] |
| Maintainer: | Nicolas Sauwen <nicolas.sauwen at openanalytics.eu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | http://renozao.github.io/NMF/ |
| NeedsCompilation: | yes |
| Citation: | NMF citation info |
| Materials: | README NEWS |
| CRAN checks: | NMF results |
| Reference manual: | NMF.pdf |
| Vignettes: |
An introduction to the package NMF (source, R code) NMF: generating heatmaps (source, R code) |
| Package source: | NMF_0.28.tar.gz |
| Windows binaries: | r-devel: NMF_0.28.zip, r-release: NMF_0.28.zip, r-oldrel: NMF_0.28.zip |
| macOS binaries: | r-release (arm64): NMF_0.28.tgz, r-oldrel (arm64): NMF_0.28.tgz, r-release (x86_64): NMF_0.28.tgz, r-oldrel (x86_64): NMF_0.28.tgz |
| Old sources: | NMF archive |
| Reverse depends: | fabisearch, funOmics, InterSIM, IntNMF, musicatk, MutationalPatterns, signeR, SomaticSignatures, SparseSignatures |
| Reverse imports: | clusterExperiment, DBNMFrank, debCAM, diceR, funOmics, hNMF, miRSM, pcaExplorer, projectR, SCdeconR, scITD, shattering, sigminer, SomaticSignatures, spectralAnalysis, SpNMF, SPOTlight |
| Reverse suggests: | AUCell, cola, crassmat, dimRed, Evacluster, iTOP, maftools, MAST, mia, mlr3pipelines, scone |
| Reverse enhances: | fdm2id |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.