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iTOP: Inferring the Topology of Omics Data

Infers a topology of relationships between different datasets, such as multi-omics and phenotypic data recorded on the same samples. We based this methodology on the RV coefficient (Robert & Escoufier, 1976, <doi:10.2307/2347233>), a measure of matrix correlation, which we have extended for partial matrix correlations and binary data (Aben et al., 2018, <doi:10.1101/293993>).

Version: 1.0.2
Imports: Matrix, corpcor
Suggests: knitr, rmarkdown, NMF, pcalg, Rgraphviz
Published: 2018-06-13
DOI: 10.32614/CRAN.package.iTOP
Author: Nanne Aben
Maintainer: Nanne Aben <nanne.aben at gmail.com>
License: GPL-2
NeedsCompilation: no
Materials: NEWS
CRAN checks: iTOP results

Documentation:

Reference manual: iTOP.pdf
Vignettes: A quick introduction to iTOP

Downloads:

Package source: iTOP_1.0.2.tar.gz
Windows binaries: r-devel: iTOP_1.0.2.zip, r-release: iTOP_1.0.2.zip, r-oldrel: iTOP_1.0.2.zip
macOS binaries: r-release (arm64): iTOP_1.0.2.tgz, r-oldrel (arm64): iTOP_1.0.2.tgz, r-release (x86_64): iTOP_1.0.2.tgz, r-oldrel (x86_64): iTOP_1.0.2.tgz
Old sources: iTOP archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.