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Genomic alterations including single nucleotide substitution, copy number alteration, etc. are the major force for cancer initialization and development. Due to the specificity of molecular lesions caused by genomic alterations, we can generate characteristic alteration spectra, called 'signature' (Wang, Shixiang, et al. (2021) <doi:10.1371/journal.pgen.1009557> & Alexandrov, Ludmil B., et al. (2020) <doi:10.1038/s41586-020-1943-3> & Steele Christopher D., et al. (2022) <doi:10.1038/s41586-022-04738-6>). This package helps users to extract, analyze and visualize signatures from genomic alteration records, thus providing new insight into cancer study.
Reference manual: | sigminer.pdf |
Vignettes: |
Analyze Copy Number Signatures with sigminer A Quick Start of sigminer Package |
Package source: | sigminer_2.3.1.tar.gz |
Windows binaries: | r-devel: sigminer_2.3.1.zip, r-release: sigminer_2.3.1.zip, r-oldrel: sigminer_2.3.1.zip |
macOS binaries: | r-release (arm64): sigminer_2.3.1.tgz, r-oldrel (arm64): sigminer_2.3.1.tgz, r-release (x86_64): sigminer_2.3.1.tgz, r-oldrel (x86_64): sigminer_2.3.1.tgz |
Old sources: | sigminer archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.