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Cross-species identification of novel gene candidates using the NCBI web service is provided. Further, sets of miRNA target genes can be identified by using the targetscan.org API.
| Version: | 0.10 |
| Depends: | R (≥ 3.2) |
| Imports: | bamsignals (≥ 1.10.0), Biostrings (≥ 2.46.0), data.table (≥ 1.11.4), GenomicRanges (≥ 1.30.3), GenomicTools.fileHandler (≥ 0.1.4), httr (≥ 1.3.1), IRanges (≥ 2.12.0), KernSmooth (≥ 2.23-15), knitr (≥ 1.20), MASS (≥ 7.3-31), R.utils (≥ 2.6.0), RCurl (≥ 1.95), rmarkdown (≥ 1.10), Rsamtools (≥ 1.30.0), S4Vectors (≥ 0.16.0), seqinr (≥ 1.0-2), stringr (≥ 1.3.1), XML (≥ 3.98-1.1) |
| Published: | 2024-04-08 |
| DOI: | 10.32614/CRAN.package.hoardeR |
| Author: | Daniel Fischer [aut, cre], Anu Sironen [aut] |
| Maintainer: | Daniel Fischer <daniel.fischer at luke.fi> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| Materials: | README ChangeLog |
| CRAN checks: | hoardeR results |
| Reference manual: | hoardeR.pdf |
| Vignettes: |
An Introduction to hoardeR |
| Package source: | hoardeR_0.10.tar.gz |
| Windows binaries: | r-devel: hoardeR_0.10.zip, r-release: hoardeR_0.10.zip, r-oldrel: hoardeR_0.10.zip |
| macOS binaries: | r-release (arm64): hoardeR_0.10.tgz, r-oldrel (arm64): not available, r-release (x86_64): hoardeR_0.10.tgz, r-oldrel (x86_64): hoardeR_0.10.tgz |
| Old sources: | hoardeR archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.