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hoardeR: Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices

Cross-species identification of novel gene candidates using the NCBI web service is provided. Further, sets of miRNA target genes can be identified by using the targetscan.org API.

Version: 0.10
Depends: R (≥ 3.2)
Imports: bamsignals (≥ 1.10.0), Biostrings (≥ 2.46.0), data.table (≥ 1.11.4), GenomicRanges (≥ 1.30.3), GenomicTools.fileHandler (≥ 0.1.4), httr (≥ 1.3.1), IRanges (≥ 2.12.0), KernSmooth (≥ 2.23-15), knitr (≥ 1.20), MASS (≥ 7.3-31), R.utils (≥ 2.6.0), RCurl (≥ 1.95), rmarkdown (≥ 1.10), Rsamtools (≥ 1.30.0), S4Vectors (≥ 0.16.0), seqinr (≥ 1.0-2), stringr (≥ 1.3.1), XML (≥ 3.98-1.1)
Published: 2024-04-08
DOI: 10.32614/CRAN.package.hoardeR
Author: Daniel Fischer [aut, cre], Anu Sironen [aut]
Maintainer: Daniel Fischer <daniel.fischer at luke.fi>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: README ChangeLog
CRAN checks: hoardeR results

Documentation:

Reference manual: hoardeR.pdf
Vignettes: An Introduction to hoardeR

Downloads:

Package source: hoardeR_0.10.tar.gz
Windows binaries: r-devel: hoardeR_0.10.zip, r-release: hoardeR_0.10.zip, r-oldrel: hoardeR_0.10.zip
macOS binaries: r-release (arm64): hoardeR_0.10.tgz, r-oldrel (arm64): not available, r-release (x86_64): hoardeR_0.10.tgz, r-oldrel (x86_64): hoardeR_0.10.tgz
Old sources: hoardeR archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=hoardeR to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.