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GenomicTools.fileHandler: File Handlers for Genomic Data Analysis

A collection of I/O tools for handling the most commonly used genomic datafiles, like fasta/-q, bed, gff, gtf, ped/map and vcf.

Version: 0.1.5.9
Depends: R (≥ 3.3), data.table (≥ 1.9.6)
Imports: snpStats
Suggests: knitr, rmarkdown
Published: 2020-03-05
DOI: 10.32614/CRAN.package.GenomicTools.fileHandler
Author: Daniel Fischer
Maintainer: Daniel Fischer <daniel.fischer at luke.fi>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: ChangeLog
In views: Omics
CRAN checks: GenomicTools.fileHandler results

Documentation:

Reference manual: GenomicTools.fileHandler.pdf
Vignettes: An Introduction to GenomicTools.fileHandler

Downloads:

Package source: GenomicTools.fileHandler_0.1.5.9.tar.gz
Windows binaries: r-devel: GenomicTools.fileHandler_0.1.5.9.zip, r-release: GenomicTools.fileHandler_0.1.5.9.zip, r-oldrel: GenomicTools.fileHandler_0.1.5.9.zip
macOS binaries: r-release (arm64): GenomicTools.fileHandler_0.1.5.9.tgz, r-oldrel (arm64): GenomicTools.fileHandler_0.1.5.9.tgz, r-release (x86_64): GenomicTools.fileHandler_0.1.5.9.tgz, r-oldrel (x86_64): GenomicTools.fileHandler_0.1.5.9.tgz
Old sources: GenomicTools.fileHandler archive

Reverse dependencies:

Reverse imports: CeTF, hoardeR

Linking:

Please use the canonical form https://CRAN.R-project.org/package=GenomicTools.fileHandler to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.