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EDE: Extinction Date Estimation from Sighting Records

Estimates the historic date of extinction of a species from a time-ordered record of sighting events. Given a table of sighting counts per year, computes extinction date estimators from the sighting-record literature: optimal linear estimation under a record-value model (Roberts & Solow, 2003), nonparametric and sighting-effort-weighted persistence tests (Solow, 1993; Solow, 2005), a sighting-rate persistence test comparable across records with different observation periods (McInerny, Roberts, Davy & Cribb, 2006), a classical confidence interval on the end of a temporal range (Strauss & Sadler, 1989), a truncation-point extrapolation (Robson & Whitlock, 1964), and a combinatorial persistence test based on inclusion-exclusion over sighting-gap occupancy (Burgman, Grimson & Ferson, 1995). Every estimator is built on a single validated input object and returns a common result class with, where defined, a point estimate, a confidence interval, or a full persistence-probability curve.

Version: 0.1.0
Depends: R (≥ 4.1.0)
Suggests: testthat (≥ 3.0.0), knitr, rmarkdown, ggplot2
Published: 2026-08-07
DOI: 10.32614/CRAN.package.EDE (may not be active yet)
Author: Rodrigo Fonseca Villa ORCID iD [aut, cre]
Maintainer: Rodrigo Fonseca Villa <rodrigo03.villa at gmail.com>
BugReports: https://github.com/rodrigosqrt3/EDE/issues
License: GPL (≥ 3)
URL: https://github.com/rodrigosqrt3/EDE
NeedsCompilation: no
Language: en-US
Materials: README
CRAN checks: EDE results

Documentation:

Reference manual: EDE.html , EDE.pdf
Vignettes: Estimating extinction dates from sighting records (source, R code)

Downloads:

Package source: EDE_0.1.0.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): EDE_0.1.0.tgz, r-oldrel (arm64): EDE_0.1.0.tgz, r-release (x86_64): EDE_0.1.0.tgz, r-oldrel (x86_64): EDE_0.1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=EDE to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.