EcoCleanR: Automated and Controlled Extraction, Cleaning, and Processing of Occurrence Data for Generating Biogeographic Ranges of Marine Organisms
Provides step-by-step automation for integrating biodiversity data from multiple online aggregators, merging and cleaning datasets while addressing challenges such as taxonomic inconsistencies, georeferencing issues, and spatial or environmental outliers. Includes functions to extract environmental data and to define the biogeographic ranges in which species are most likely to occur.
| Version: | 1.0.1 |
| Depends: | R (≥ 3.5) |
| Imports: | dplyr, geodata, geosphere, ggplot2, mregions2, patchwork, rlang, sdmpredictors, sf, taxize, terra, tidyr |
| Suggests: | knitr, rgbif, robis, ridigbio, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2025-11-19 |
| DOI: | 10.32614/CRAN.package.EcoCleanR |
| Author: | Priyanka Soni 
[aut, cre],
Austin Hendy [aut],
David Bottjer [aut],
Vijay Barve [ctb] |
| Maintainer: | Priyanka Soni <sonip at usc.edu> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| Citation: | EcoCleanR citation info |
| Materials: | README |
| CRAN checks: | EcoCleanR results [issues need fixing before 2025-12-22] |
Documentation:
| Reference manual: | EcoCleanR.html , EcoCleanR.pdf |
| Vignettes: |
data_cleaning (source, R code) data_merging (source, R code) |
Downloads:
| Package source: | EcoCleanR_1.0.1.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: EcoCleanR_1.0.1.zip |
| macOS binaries: | r-release (arm64): EcoCleanR_1.0.1.tgz, r-oldrel (arm64): EcoCleanR_1.0.1.tgz, r-release (x86_64): EcoCleanR_1.0.1.tgz, r-oldrel (x86_64): EcoCleanR_1.0.1.tgz |
Linking:
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