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FILEST: Fine-Level Structure Simulator

A population genetic simulator, which is able to generate synthetic datasets for single-nucleotide polymorphisms (SNP) for multiple populations. The genetic distances among populations can be set according to the Fixation Index (Fst) as explained in Balding and Nichols (1995) <doi:10.1007/BF01441146>. This tool is able to simulate outlying individuals and missing SNPs can be specified. For Genome-wide association study (GWAS), disease status can be set in desired level according risk ratio.

Version: 1.1.2
Depends: R (≥ 3.2.4)
Imports: KRIS (≥ 1.1.1), rARPACK, grDevices, stats, utils
Suggests: testthat
Published: 2021-01-25
DOI: 10.32614/CRAN.package.FILEST
Author: Kridsadakorn Chaichoompu [aut, cre], Kristel Van Steen [aut], Fentaw Abegaz [aut]
Maintainer: Kridsadakorn Chaichoompu <kridsadakorn at biostatgen.org>
BugReports: https://gitlab.com/kris.ccp/filest/-/issues
License: MIT + file LICENSE
URL: https://gitlab.com/kris.ccp/filest
NeedsCompilation: no
Citation: FILEST citation info
Materials: README NEWS
In views: MissingData
CRAN checks: FILEST results

Documentation:

Reference manual: FILEST.pdf

Downloads:

Package source: FILEST_1.1.2.tar.gz
Windows binaries: r-devel: FILEST_1.1.2.zip, r-release: FILEST_1.1.2.zip, r-oldrel: FILEST_1.1.2.zip
macOS binaries: r-release (arm64): FILEST_1.1.2.tgz, r-oldrel (arm64): FILEST_1.1.2.tgz, r-release (x86_64): FILEST_1.1.2.tgz, r-oldrel (x86_64): FILEST_1.1.2.tgz
Old sources: FILEST archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.