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Implementation of the GTE (Group Technical Effects) model for single-cell data. GTE is a quantitative metric to assess batch effects for individual genes in single-cell data. For a single-cell dataset, the user can calculate the GTE value for individual features (such as genes), and then identify the highly batch-sensitive features. Removing these highly batch-sensitive features results in datasets with low batch effects.
| Version: | 1.0.0 |
| Depends: | R (≥ 4.0.0) |
| Imports: | stats, Matrix, matrixStats, Rcpp, RcppEigen, dplyr |
| LinkingTo: | Rcpp (≥ 1.0.8), RcppEigen |
| Published: | 2025-02-27 |
| DOI: | 10.32614/CRAN.package.GTEs |
| Author: | Yang Zhou [aut, cre] |
| Maintainer: | Yang Zhou <yangz at stu.hit.edu.cn> |
| BugReports: | https://github.com/yzhou1999/GTEs/issues |
| License: | GPL-3 |
| URL: | https://github.com/yzhou1999/GTEs, https://yzhou1999.github.io/GTEs/ |
| NeedsCompilation: | yes |
| Language: | en-US |
| Materials: | README |
| CRAN checks: | GTEs results |
| Reference manual: | GTEs.pdf |
| Package source: | GTEs_1.0.0.tar.gz |
| Windows binaries: | r-devel: GTEs_1.0.0.zip, r-release: GTEs_1.0.0.zip, r-oldrel: GTEs_1.0.0.zip |
| macOS binaries: | r-devel (arm64): GTEs_1.0.0.tgz, r-release (arm64): GTEs_1.0.0.tgz, r-oldrel (arm64): GTEs_1.0.0.tgz, r-devel (x86_64): GTEs_1.0.0.tgz, r-release (x86_64): GTEs_1.0.0.tgz, r-oldrel (x86_64): GTEs_1.0.0.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.