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GenoPop: Genotype Imputation and Population Genomics Efficiently from
Variant Call Formatted (VCF) Files
Tools for efficient processing of large, whole genome genotype data sets in variant call format (VCF). It includes several functions to calculate commonly used population genomic metrics and a method for reference panel free genotype imputation, which is described in the preprint Gurke & Mayer (2024) <doi:10.22541/au.172515591.10119928/v1>.
| Version: |
0.9.3 |
| Imports: |
Rsamtools, GenomicRanges, foreach, doParallel, parallel, missForest, IRanges |
| Suggests: |
knitr, rmarkdown, testthat (≥ 3.0.0), withr |
| Published: |
2024-09-11 |
| DOI: |
10.32614/CRAN.package.GenoPop |
| Author: |
Marie Gurke  [aut,
cre] |
| Maintainer: |
Marie Gurke <margurke at gmail.com> |
| License: |
GPL (≥ 3) |
| NeedsCompilation: |
no |
| Citation: |
GenoPop citation info |
| Materials: |
README |
| CRAN checks: |
GenoPop results |
Documentation:
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.