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Simulation of segments shared identical-by-descent (IBD) by pedigree members. Using sex specific recombination rates along the human genome (Kong et. al (2010) <doi:10.1038/nature09525>), phased chromosomes are simulated for all pedigree members, either by unconditional gene dropping or conditional on a specified IBD pattern. Additional functions provide summaries and further analysis of the simulated genomes.
| Version: | 0.9-8 |
| Depends: | R (≥ 3.3), paramlink (≥ 1.1) |
| Imports: | stats |
| Published: | 2019-04-06 |
| DOI: | 10.32614/CRAN.package.IBDsim |
| Author: | Magnus Dehli Vigeland |
| Maintainer: | Magnus Dehli Vigeland <m.d.vigeland at medisin.uio.no> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| Materials: | NEWS |
| CRAN checks: | IBDsim results |
| Reference manual: | IBDsim.pdf |
| Package source: | IBDsim_0.9-8.tar.gz |
| Windows binaries: | r-devel: IBDsim_0.9-8.zip, r-release: IBDsim_0.9-8.zip, r-oldrel: IBDsim_0.9-8.zip |
| macOS binaries: | r-release (arm64): IBDsim_0.9-8.tgz, r-oldrel (arm64): IBDsim_0.9-8.tgz, r-release (x86_64): IBDsim_0.9-8.tgz, r-oldrel (x86_64): IBDsim_0.9-8.tgz |
| Old sources: | IBDsim archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.