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Rank-based tests for enrichment of KOG (euKaryotic Orthologous Groups) classes with up- or down-regulated genes based on a continuous measure. The meta-analysis is based on correlation of KOG delta-ranks across datasets (delta-rank is the difference between mean rank of genes belonging to a KOG class and mean rank of all other genes). With binary measure (1 or 0 to indicate significant and non-significant genes), one-tailed Fisher's exact test for over-representation of each KOG class among significant genes will be performed.
| Version: | 1.2 |
| Depends: | R (≥ 2.10), pheatmap |
| Published: | 2019-02-19 |
| DOI: | 10.32614/CRAN.package.KOGMWU |
| Author: | Mikhail V. Matz |
| Maintainer: | Mikhail V. Matz <matz at utexas.edu> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | KOGMWU results |
| Reference manual: | KOGMWU.pdf |
| Package source: | KOGMWU_1.2.tar.gz |
| Windows binaries: | r-devel: KOGMWU_1.2.zip, r-release: KOGMWU_1.2.zip, r-oldrel: KOGMWU_1.2.zip |
| macOS binaries: | r-release (arm64): KOGMWU_1.2.tgz, r-oldrel (arm64): KOGMWU_1.2.tgz, r-release (x86_64): KOGMWU_1.2.tgz, r-oldrel (x86_64): KOGMWU_1.2.tgz |
| Old sources: | KOGMWU archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.