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Creates a consensus genetic map by merging linkage maps from different populations. The software uses linear programming (LP) to efficiently minimize the mean absolute error between the consensus map and the linkage maps. This minimization is performed subject to linear inequality constraints that ensure the ordering of the markers in the linkage maps is preserved. When marker order is inconsistent between linkage maps, a minimum set of ordinal constraints is deleted to resolve the conflicts.
| Version: | 1.7 |
| Depends: | Rglpk, Matrix |
| Published: | 2018-06-07 |
| DOI: | 10.32614/CRAN.package.LPmerge |
| Author: | Jeffrey Endelman |
| Maintainer: | Jeffrey Endelman <endelman at wisc.edu> |
| License: | GPL-3 |
| URL: | http://potatobreeding.cals.wisc.edu/software |
| NeedsCompilation: | no |
| Citation: | LPmerge citation info |
| CRAN checks: | LPmerge results |
| Reference manual: | LPmerge.pdf |
| Package source: | LPmerge_1.7.tar.gz |
| Windows binaries: | r-devel: LPmerge_1.7.zip, r-release: LPmerge_1.7.zip, r-oldrel: LPmerge_1.7.zip |
| macOS binaries: | r-release (arm64): LPmerge_1.7.tgz, r-oldrel (arm64): LPmerge_1.7.tgz, r-release (x86_64): LPmerge_1.7.tgz, r-oldrel (x86_64): LPmerge_1.7.tgz |
| Old sources: | LPmerge archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.