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Common coordinate-based workflows involving processed chromatin loop and genomic element data are considered and packaged into appropriate customizable functions. Includes methods for linking element sets via chromatin loops and creating consensus loop datasets.
| Version: | 0.1.1 |
| Depends: | R (≥ 3.4.0) |
| Imports: | GenomicRanges, IRanges, utils, S4Vectors |
| Suggests: | testthat, knitr, rmarkdown, covr |
| Published: | 2019-12-20 |
| DOI: | 10.32614/CRAN.package.LoopRig |
| Author: | Hassaan Maan [aut, cre] |
| Maintainer: | Hassaan Maan <hurmaan99 at gmail.com> |
| License: | GPL-3 | file LICENSE |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | LoopRig results |
| Reference manual: | LoopRig.pdf |
| Vignettes: |
LoopRig-Tutorial |
| Package source: | LoopRig_0.1.1.tar.gz |
| Windows binaries: | r-devel: LoopRig_0.1.1.zip, r-release: LoopRig_0.1.1.zip, r-oldrel: LoopRig_0.1.1.zip |
| macOS binaries: | r-release (arm64): LoopRig_0.1.1.tgz, r-oldrel (arm64): LoopRig_0.1.1.tgz, r-release (x86_64): LoopRig_0.1.1.tgz, r-oldrel (x86_64): LoopRig_0.1.1.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.