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MALDIquant: Quantitative Analysis of Mass Spectrometry Data

A complete analysis pipeline for matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF) and other two-dimensional mass spectrometry data. In addition to commonly used plotting and processing methods it includes distinctive features, namely baseline subtraction methods such as morphological filters (TopHat) or the statistics-sensitive non-linear iterative peak-clipping algorithm (SNIP), peak alignment using warping functions, handling of replicated measurements as well as allowing spectra with different resolutions.

Version: 1.22.3
Depends: R (≥ 4.0.0), methods
Imports: parallel
Suggests: knitr, testthat (≥ 0.8)
Published: 2024-08-19
DOI: 10.32614/CRAN.package.MALDIquant
Author: Sebastian Gibb ORCID iD [aut, cre], Korbinian Strimmer ORCID iD [ths], Sigurdur Smarason [ctb], Laurent Gatto ORCID iD [ctb], Paolo Inglese [ctb]
Maintainer: Sebastian Gibb <mail at sebastiangibb.de>
BugReports: https://github.com/sgibb/MALDIquant/issues/
License: GPL (≥ 3)
URL: https://strimmerlab.github.io/software/maldiquant/, https://github.com/sgibb/MALDIquant/
NeedsCompilation: yes
Citation: MALDIquant citation info
Materials: NEWS
In views: ChemPhys
CRAN checks: MALDIquant results

Documentation:

Reference manual: MALDIquant.pdf
Vignettes: MALDIquant: Quantitative Analysis of Mass Spectrometry Data (source, R code)

Downloads:

Package source: MALDIquant_1.22.3.tar.gz
Windows binaries: r-devel: MALDIquant_1.22.3.zip, r-release: MALDIquant_1.22.3.zip, r-oldrel: MALDIquant_1.22.3.zip
macOS binaries: r-release (arm64): MALDIquant_1.22.3.tgz, r-oldrel (arm64): MALDIquant_1.22.3.tgz, r-release (x86_64): MALDIquant_1.22.3.tgz, r-oldrel (x86_64): MALDIquant_1.22.3.tgz
Old sources: MALDIquant archive

Reverse dependencies:

Reverse depends: MALDIquantForeign, MALDIrppa, MGMS2, MSclassifR
Reverse imports: IsoCor, MALDIcellassay, maldipickr, MSnbase
Reverse suggests: RforProteomics, xcms

Linking:

Please use the canonical form https://CRAN.R-project.org/package=MALDIquant to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.