The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

maldipickr: Dereplicate and Cherry-Pick Mass Spectrometry Spectra

Convenient wrapper functions for the analysis of matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF) spectra data in order to select only representative spectra (also called cherry-pick). The package covers the preprocessing and dereplication steps (based on Strejcek, Smrhova, Junkova and Uhlik (2018) <doi:10.3389/fmicb.2018.01294>) needed to cluster MALDI-TOF spectra before the final cherry-picking step. It enables the easy exclusion of spectra and/or clusters to accommodate complex cherry-picking strategies. Alternatively, cherry-picking using taxonomic identification MALDI-TOF data is made easy with functions to import inconsistently formatted reports.

Version: 1.3.1
Depends: R (≥ 3.2.0)
Imports: dplyr, lifecycle, magrittr, MALDIquant, readBrukerFlexData, rlang, stats, tibble, tidyr, tidyselect, tools, utils
Suggests: coop, knitr, rmarkdown, spelling, testthat
Published: 2024-09-12
DOI: 10.32614/CRAN.package.maldipickr
Author: Charlie Pauvert ORCID iD [aut, cre, cph], David Wylensek ORCID iD [ctb], Selina Nüchtern [ctb], Thomas Clavel ORCID iD [ctb, fnd, cph]
Maintainer: Charlie Pauvert <cpauvert at ukaachen.de>
BugReports: https://github.com/ClavelLab/maldipickr/issues
License: GPL (≥ 3)
URL: https://github.com/ClavelLab/maldipickr, https://clavellab.github.io/maldipickr/
NeedsCompilation: no
Language: en-US
Citation: maldipickr citation info
Materials: README NEWS
CRAN checks: maldipickr results

Documentation:

Reference manual: maldipickr.pdf
Vignettes: dereplicate-bruker-maldi-biotyper-spectra (source, R code)
import-data-from-bruker-maldi-biotyper (source, R code)
maldipickr (source, R code)

Downloads:

Package source: maldipickr_1.3.1.tar.gz
Windows binaries: r-devel: maldipickr_1.3.1.zip, r-release: maldipickr_1.3.1.zip, r-oldrel: maldipickr_1.3.1.zip
macOS binaries: r-release (arm64): maldipickr_1.3.1.tgz, r-oldrel (arm64): maldipickr_1.3.1.tgz, r-release (x86_64): maldipickr_1.3.1.tgz, r-oldrel (x86_64): maldipickr_1.3.1.tgz
Old sources: maldipickr archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=maldipickr to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.