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Runs a Shiny web application that merges raw 'qPCR' fluorescence data with related metadata to visualize species presence/absence detection patterns and assess data quality. The application calculates threshold values from raw fluorescence data using a method based on the second derivative method, Luu-The et al (2005) <doi:10.2144/05382RR05>, and utilizes the ‘chipPCR’ package by Rödiger, Burdukiewicz, & Schierack (2015) <doi:10.1093/bioinformatics/btv205> to calculate Cq values. The application has the ability to connect to a custom developed MySQL database to populate the applications interface. The application allows users to interact with visualizations such as a dynamic map, amplification curves and standard curves, that allow for zooming and/or filtering. It also enables the generation of customized exportable reports based on filtered mapping data.
| Version: | 0.2.3 |
| Imports: | RMySQL, shinydashboard, DBI, DT, leaflet, leaflet.extras, shinyjs, ggplot2, dplyr, readxl, plotly, reactable, writexl, xfun, berryFunctions, shinyWidgets, shiny, htmltools, methods, utils, stats, bslib, htmlwidgets |
| Published: | 2021-06-23 |
| DOI: | 10.32614/CRAN.package.MDMAPR |
| Author: | Alka Benawra |
| Maintainer: | Alka Benawra <alkabenawra at rogers.com> |
| BugReports: | https://github.com/HannerLab/MDMAPR/issues |
| License: | GPL-3 |
| URL: | https://github.com/HannerLab/MDMAPR |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | MDMAPR results |
| Reference manual: | MDMAPR.pdf |
| Package source: | MDMAPR_0.2.3.tar.gz |
| Windows binaries: | r-devel: MDMAPR_0.2.3.zip, r-release: MDMAPR_0.2.3.zip, r-oldrel: MDMAPR_0.2.3.zip |
| macOS binaries: | r-release (arm64): MDMAPR_0.2.3.tgz, r-oldrel (arm64): MDMAPR_0.2.3.tgz, r-release (x86_64): MDMAPR_0.2.3.tgz, r-oldrel (x86_64): MDMAPR_0.2.3.tgz |
| Old sources: | MDMAPR archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.