MIC: Analysis of Antimicrobial Minimum Inhibitory Concentration Data

Analyse, plot, and tabulate antimicrobial minimum inhibitory concentration (MIC) data. Validate the results of an MIC experiment by comparing observed MIC values to a gold standard assay, in line with standards from the International Organization for Standardization (2021) <https://www.iso.org/standard/79377.html>. Perform MIC prediction from whole genome sequence data stored in the Pathosystems Resource Integration Center (2013) <doi:10.1093/nar/gkt1099> database or locally.

Version:	1.0.2
Depends:	R (≥ 4.1.0)
Imports:	AMR, glue, readr, dplyr, Rcpp, data.table, Biostrings, stringr, rlang, tidyr, future.apply, progressr, lemon, ggplot2, forcats, purrr, tibble
LinkingTo:	Rcpp
Suggests:	testthat (≥ 3.0.0), xgboost, flextable, caret, lifecycle, future
Published:	2025-02-07
DOI:	10.32614/CRAN.package.MIC
Author:	Alessandro Gerada [aut, cre, cph]
Maintainer:	Alessandro Gerada <alessandro.gerada at liverpool.ac.uk>
BugReports:	https://github.com/agerada/MIC/issues
License:	GPL (≥ 3)
URL:	https://github.com/agerada/MIC
NeedsCompilation:	yes
Materials:	README NEWS
CRAN checks:	MIC results

Documentation:

Reference manual:

MIC.pdf

Downloads:

Package source:	MIC_1.0.2.tar.gz
Windows binaries:	r-devel: MIC_1.0.2.zip, r-release: MIC_1.0.2.zip, r-oldrel: MIC_1.0.2.zip
macOS binaries:	r-devel (arm64): MIC_1.0.2.tgz, r-release (arm64): MIC_1.0.2.tgz, r-oldrel (arm64): not available, r-devel (x86_64): MIC_1.0.2.tgz, r-release (x86_64): MIC_1.0.2.tgz, r-oldrel (x86_64): MIC_1.0.2.tgz

Linking:

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