The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Requires rooted phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways. "MonoPhy: a simple R package to find and visualize monophyly issues." Schwery, O. & O'Meara, B.C. (2016) <doi:10.7717/peerj-cs.56>.
| Version: | 1.3.2 |
| Depends: | ape, phytools |
| Imports: | phangorn, RColorBrewer |
| Suggests: | knitr, testthat, paleotree, rmarkdown, taxize |
| Published: | 2024-10-17 |
| DOI: | 10.32614/CRAN.package.MonoPhy |
| Author: | Orlando Schwery [aut, cre], Brian C. O'Meara [aut, ctb], Peter Cowman [ctb] |
| Maintainer: | Orlando Schwery <schwery.macroevo at pm.me> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Citation: | MonoPhy citation info |
| CRAN checks: | MonoPhy results |
| Reference manual: | MonoPhy.pdf |
| Vignettes: |
MonoPhy Tutorial (source, R code) |
| Package source: | MonoPhy_1.3.2.tar.gz |
| Windows binaries: | r-devel: MonoPhy_1.3.2.zip, r-release: MonoPhy_1.3.2.zip, r-oldrel: MonoPhy_1.3.2.zip |
| macOS binaries: | r-release (arm64): MonoPhy_1.3.2.tgz, r-oldrel (arm64): MonoPhy_1.3.2.tgz, r-release (x86_64): MonoPhy_1.3.2.tgz, r-oldrel (x86_64): MonoPhy_1.3.2.tgz |
| Old sources: | MonoPhy archive |
Please use the canonical form https://CRAN.R-project.org/package=MonoPhy to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.