The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Computes the optimal number of regions (or subdivisions) and their position in serial structures without a priori assumptions and to visualize the results. After reducing data dimensionality with the built-in function for data ordination, regions are fitted as segmented linear regressions along the serial structure. Every region boundary position and increasing number of regions are iteratively fitted and the best model (number of regions and boundary positions) is selected with an information criterion. This package expands on the previous 'regions' package (Jones et al., Science 2018) with improved computation and more fitting and plotting options.
Version: | 0.1.0 |
Depends: | R (≥ 4.0.0) |
Imports: | stats, parallel, utils, grDevices, RColorBrewer (≥ 1.1-3), cluster (≥ 2.1.4), scales (≥ 1.3.0), ggplot2 (≥ 3.5.1), chk (≥ 0.9.0), pbapply (≥ 1.7-2) |
Suggests: | viridisLite, patchwork (≥ 1.1.0), knitr, rmarkdown |
Published: | 2024-08-21 |
DOI: | 10.32614/CRAN.package.MorphoRegions |
Author: | Amandine Gillet |
Maintainer: | Amandine Gillet <gillet.aman at gmail.com> |
BugReports: | https://github.com/aagillet/MorphoRegions/issues |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
URL: | https://aagillet.github.io/MorphoRegions/, https://github.com/aagillet/MorphoRegions |
NeedsCompilation: | no |
Citation: | MorphoRegions citation info |
Materials: | README |
CRAN checks: | MorphoRegions results |
Reference manual: | MorphoRegions.pdf |
Vignettes: |
MorphoRegions (source) |
Package source: | MorphoRegions_0.1.0.tar.gz |
Windows binaries: | r-devel: MorphoRegions_0.1.0.zip, r-release: MorphoRegions_0.1.0.zip, r-oldrel: MorphoRegions_0.1.0.zip |
macOS binaries: | r-release (arm64): MorphoRegions_0.1.0.tgz, r-oldrel (arm64): MorphoRegions_0.1.0.tgz, r-release (x86_64): MorphoRegions_0.1.0.tgz, r-oldrel (x86_64): MorphoRegions_0.1.0.tgz |
Please use the canonical form https://CRAN.R-project.org/package=MorphoRegions to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.