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MultiNMix: Multi-Species N-Mixture (MNM) Models with 'nimble'

Simulating data and fitting multi-species N-mixture models using 'nimble'. Includes features for handling zero-inflation and temporal correlation, Bayesian inference, model diagnostics, parameter estimation, and predictive checks. Designed for ecological studies with zero-altered or time-series data. Mimnagh, N., Parnell, A., Prado, E., & Moral, R. A. (2022) <doi:10.1007/s10651-022-00542-7>. Royle, J. A. (2004) <doi:10.1111/j.0006-341X.2004.00142.x>.

Version: 0.1.0
Depends: nimble, R (≥ 3.5)
Imports: clusterGeneration, mvtnorm, extraDistr, rstan, stats, abind, methods, coda
Suggests: testthat (≥ 3.0.0), knitr, rmarkdown
Published: 2025-03-19
DOI: 10.32614/CRAN.package.MultiNMix
Author: Niamh Mimnagh [aut, cre], Rafael de Andrade Moral [aut]
Maintainer: Niamh Mimnagh <niamhmimnagh at gmail.com>
BugReports: https://github.com/niamhmimnagh/MultiNMix/issues
License: GPL (≥ 3)
URL: https://github.com/niamhmimnagh/MultiNMix
NeedsCompilation: no
Materials: README
CRAN checks: MultiNMix results

Documentation:

Reference manual: MultiNMix.pdf

Downloads:

Package source: MultiNMix_0.1.0.tar.gz
Windows binaries: r-devel: MultiNMix_0.1.0.zip, r-release: MultiNMix_0.1.0.zip, r-oldrel: MultiNMix_0.1.0.zip
macOS binaries: r-devel (arm64): MultiNMix_0.1.0.tgz, r-release (arm64): MultiNMix_0.1.0.tgz, r-oldrel (arm64): MultiNMix_0.1.0.tgz, r-devel (x86_64): MultiNMix_0.1.0.tgz, r-release (x86_64): MultiNMix_0.1.0.tgz, r-oldrel (x86_64): MultiNMix_0.1.0.tgz

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.