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NCutYX: Clustering of Omics Data of Multiple Types with a Multilayer Network Representation

Omics data come in different forms: gene expression, methylation, copy number, protein measurements and more. 'NCutYX' allows clustering of variables, of samples, and both variables and samples (biclustering), while incorporating the dependencies across multiple types of Omics data. (SJ Teran Hidalgo et al (2017), <doi:10.1186/s12864-017-3990-1>).

Version: 0.1.0
Depends: R (≥ 3.4)
Imports: Rcpp (≥ 0.12.2), glmnet (≥ 2.0-5), MASS (≥ 7.3-47), mvtnorm (≥ 1.0-6), fields (≥ 9.0)
LinkingTo: Rcpp, RcppEigen
Suggests: knitr, rmarkdown
Published: 2018-02-09
DOI: 10.32614/CRAN.package.NCutYX
Author: Sebastian J. Teran Hidalgo, Shuangge Ma, Ruofan Bie
Maintainer: Sebastian J. Teran Hidalgo <sebastianteranhidalgo at gmail.com>
BugReports: https://github.com/Seborinos/NCutYX/issues
License: GPL-3
URL: https://github.com/Seborinos/NCutYX
NeedsCompilation: yes
Materials: README
CRAN checks: NCutYX results

Documentation:

Reference manual: NCutYX.pdf
Vignettes: The NCutYX package

Downloads:

Package source: NCutYX_0.1.0.tar.gz
Windows binaries: r-devel: NCutYX_0.1.0.zip, r-release: NCutYX_0.1.0.zip, r-oldrel: NCutYX_0.1.0.zip
macOS binaries: r-release (arm64): NCutYX_0.1.0.tgz, r-oldrel (arm64): NCutYX_0.1.0.tgz, r-release (x86_64): NCutYX_0.1.0.tgz, r-oldrel (x86_64): NCutYX_0.1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=NCutYX to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.