ProActive: Detect Elevations and Gaps in Mapped Sequencing Read Coverage

Automate the detection of gaps and elevations in mapped sequencing read coverage using a 2D pattern-matching algorithm. 'ProActive' detects, characterizes and visualizes read coverage patterns in both genomes and metagenomes. Optionally, users may provide gene predictions associated with their genome or metagenome in the form of a .gff file. In this case, 'ProActive' will generate an additional output table containing the gene predictions found within the detected regions of gapped and elevated read coverage.

Version:	0.0.2
Depends:	R (≥ 4.2.0)
Imports:	utils, stats, dplyr, ggplot2, stringr
Suggests:	knitr, rmarkdown, testthat (≥ 3.0.0), kableExtra
Published:	2025-01-14
DOI:	10.32614/CRAN.package.ProActive
Author:	Jessie Maier [aut, cre, cph], Manuel Kleiner [aut, ths]
Maintainer:	Jessie Maier <jlmaier at ncsu.edu>
BugReports:	https://github.com/jlmaier12/ProActive/issues
License:	GPL-2
URL:	https://github.com/jlmaier12/ProActive, https://jlmaier12.github.io/ProActive/
NeedsCompilation:	no
Materials:	README NEWS
CRAN checks:	ProActive results

Documentation:

Reference manual:	ProActive.pdf
Vignettes:	ProActive (source, R code)

Downloads:

Package source:	ProActive_0.0.2.tar.gz
Windows binaries:	r-devel: not available, r-release: not available, r-oldrel: ProActive_0.0.2.zip
macOS binaries:	r-release (arm64): ProActive_0.0.2.tgz, r-oldrel (arm64): ProActive_0.0.2.tgz, r-release (x86_64): ProActive_0.0.2.tgz, r-oldrel (x86_64): ProActive_0.0.2.tgz

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