The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Conduct multiple quantitative trait loci (QTL) mapping under the framework of random-QTL-effect linear mixed model. First, each position on the genome is detected in order to obtain a negative logarithm P-value curve against genome position. Then, all the peaks on each effect (additive or dominant) curve are viewed as potential QTL, all the effects of the potential QTL are included in a multi-QTL model, their effects are estimated by empirical Bayes in doubled haploid population or by adaptive lasso in F2 population, and true QTL are identified by likelihood radio test. See Wen et al. (2018) <doi:10.1093/bib/bby058>.
| Version: | 2.1.1 |
| Depends: | R (≥ 3.5.0), shiny, MASS, qtl |
| Imports: | Rcpp (≥ 0.12.17), methods, openxlsx, stringr, data.table, glmnet, doParallel, foreach, QTL.gCIMapping |
| LinkingTo: | Rcpp |
| Published: | 2020-10-12 |
| DOI: | 10.32614/CRAN.package.QTL.gCIMapping.GUI |
| Author: | Zhang Ya-Wen, Wen Yang-Jun, Wang Shi-Bo, and Zhang Yuan-Ming |
| Maintainer: | Yuanming Zhang <soyzhang at mail.hzau.edu.cn> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| CRAN checks: | QTL.gCIMapping.GUI results |
| Reference manual: | QTL.gCIMapping.GUI.pdf |
| Package source: | QTL.gCIMapping.GUI_2.1.1.tar.gz |
| Windows binaries: | r-devel: QTL.gCIMapping.GUI_2.1.1.zip, r-release: QTL.gCIMapping.GUI_2.1.1.zip, r-oldrel: QTL.gCIMapping.GUI_2.1.1.zip |
| macOS binaries: | r-release (arm64): QTL.gCIMapping.GUI_2.1.1.tgz, r-oldrel (arm64): QTL.gCIMapping.GUI_2.1.1.tgz, r-release (x86_64): QTL.gCIMapping.GUI_2.1.1.tgz, r-oldrel (x86_64): QTL.gCIMapping.GUI_2.1.1.tgz |
| Old sources: | QTL.gCIMapping.GUI archive |
Please use the canonical form https://CRAN.R-project.org/package=QTL.gCIMapping.GUI to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.