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Processing and analysis of targeted sequencing data. The package provides a user-friendly interface for core 'VSEARCH' (Rognes et al. (2016), <doi:10.7717/peerj.2584>) functions, in addition to tools for visualization and parameter tuning.
| Version: | 1.0.0 |
| Depends: | R (≥ 4.1) |
| Imports: | ape (≥ 5.8.1), cowplot (≥ 1.1.3), dplyr, ggExtra (≥ 0.10.1), ggplot2 (≥ 3.5.1), microseq (≥ 2.1.6), phyloseq (≥ 1.50.0), RColorBrewer (≥ 1.1.3), readr (≥ 2.1.5), stats, stringr (≥ 1.5.1), tibble (≥ 3.2.1), tidyr (≥ 1.3.1) |
| Suggests: | rmarkdown, testthat (≥ 3.0.0), withr (≥ 3.0.2) |
| Published: | 2025-10-26 |
| DOI: | 10.32614/CRAN.package.Rsearch (may not be active yet) |
| Author: | Cassandra Stamsaas [cre, aut], Lars Snipen [aut], Torbjørn Rognes [aut], Hilde Vinje [aut] |
| Maintainer: | Cassandra Stamsaas <cassandra.hjortdahl at nmbu.no> |
| BugReports: | https://github.com/CassandraHjo/Rsearch/issues/ |
| License: | GPL (≥ 3) |
| URL: | https://cassandrahjo.github.io/Rsearch/, https://github.com/CassandraHjo/Rsearch/ |
| NeedsCompilation: | no |
| CRAN checks: | Rsearch results |
| Reference manual: | Rsearch.html , Rsearch.pdf |
| Package source: | Rsearch_1.0.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: Rsearch_1.0.0.zip |
| macOS binaries: | r-release (arm64): Rsearch_1.0.0.tgz, r-oldrel (arm64): not available, r-release (x86_64): Rsearch_1.0.0.tgz, r-oldrel (x86_64): not available |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.