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Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values.
| Version: | 2.2.5 |
| Depends: | R (≥ 2.13.0), Matrix, SPAtest, RSpectra |
| Published: | 2023-01-15 |
| DOI: | 10.32614/CRAN.package.SKAT |
| Author: | Seunggeun (Shawn) Lee and Zhangchen Zhao, with contributions from Larisa Miropolsky and Michael Wu |
| Maintainer: | Seunggeun (Shawn) Lee <lee7801 at snu.ac.kr> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| CRAN checks: | SKAT results |
| Reference manual: | SKAT.pdf |
| Vignettes: |
SKAT |
| Package source: | SKAT_2.2.5.tar.gz |
| Windows binaries: | r-devel: SKAT_2.2.5.zip, r-release: SKAT_2.2.5.zip, r-oldrel: SKAT_2.2.5.zip |
| macOS binaries: | r-release (arm64): SKAT_2.2.5.tgz, r-oldrel (arm64): SKAT_2.2.5.tgz, r-release (x86_64): SKAT_2.2.5.tgz, r-oldrel (x86_64): SKAT_2.2.5.tgz |
| Old sources: | SKAT archive |
| Reverse depends: | FSTpackage, GenoScan, LGEWIS, LGRF, Mega2R, WGScan, ZIM4rv |
| Reverse imports: | AllelicSeries, GBJ, MetaSKAT, SMUT, zfa |
| Reverse suggests: | BGData, bigQF, FastKM, seqminer |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.