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SexSeek: Estimate Genetic Sex from Expression Counts

Infers the genetic sex of samples, donors or cells from bulk or single-cell RNA sequencing counts. Accepts dense or sparse matrices, delimited text files, 10x Genomics outputs, and 'Seurat', 'SingleCellExperiment' and 'SummarizedExperiment' objects.

Version: 0.1.0
Depends: R (≥ 4.1)
Imports: ggplot2, Matrix, methods, stats, utils
Suggests: genevintage (≥ 0.1.3), hdf5r, knitr, rmarkdown, SeuratObject, SingleCellExperiment, SummarizedExperiment, testthat (≥ 3.0.0)
Published: 2026-11-03
DOI: 10.32614/CRAN.package.SexSeek (may not be active yet)
Author: Saket Choudhary ORCID iD [aut, cre, cph]
Maintainer: Saket Choudhary <saketc at iitb.ac.in>
BugReports: https://github.com/saketlab/SexSeek/issues
License: MIT + file LICENSE
URL: https://sexseek.saketlab.org, https://github.com/saketlab/SexSeek
NeedsCompilation: no
Language: en-GB
Materials: README, NEWS
CRAN checks: SexSeek results

Documentation:

Reference manual: SexSeek.html , SexSeek.pdf
Vignettes: Introduction to SexSeek (source, R code)

Downloads:

Package source: SexSeek_0.1.0.tar.gz
Windows binaries: r-devel: not available, r-release: SexSeek_0.1.0.zip, r-oldrel: SexSeek_0.1.0.zip
macOS binaries: r-release (arm64): SexSeek_0.1.0.tgz, r-oldrel (arm64): SexSeek_0.1.0.tgz, r-release (x86_64): SexSeek_0.1.0.tgz, r-oldrel (x86_64): SexSeek_0.1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=SexSeek to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.