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Allows search and visualisation of a collection of uniformly processed skeletal transcriptomic datasets. Includes methods to identify datasets where genes of interest are differentially expressed and find datasets with a similar gene expression pattern to a query dataset Soul J, Hardingham TE, Boot-Handford RP, Schwartz JM (2019) <doi:10.1093/bioinformatics/bty947>.
| Version: | 0.1.1 |
| Depends: | R (≥ 4.0) |
| Imports: | arrow, cowplot, dplyr, DT, ggplot2, ggrepel, httr, igraph, miniUI, pbapply, plotly, rlang, shiny, stats, tidyr, utils, visNetwork |
| Suggests: | mockery, rmarkdown, knitr, testthat (≥ 3.0.0), withr |
| Published: | 2025-05-06 |
| DOI: | 10.32614/CRAN.package.SkeletalVis |
| Author: | Jamie Soul [aut, cre, cph] |
| Maintainer: | Jamie Soul <jamie.soul at liverpool.ac.uk> |
| BugReports: | https://github.com/soulj/SkeletalVis/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/soulj/SkeletalVis |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | SkeletalVis results |
| Reference manual: | SkeletalVis.pdf |
| Vignettes: |
SkeletalVis (source, R code) |
| Package source: | SkeletalVis_0.1.1.tar.gz |
| Windows binaries: | r-devel: not available, r-release: SkeletalVis_0.1.1.zip, r-oldrel: not available |
| macOS binaries: | r-release (arm64): SkeletalVis_0.1.1.tgz, r-oldrel (arm64): SkeletalVis_0.1.1.tgz, r-release (x86_64): SkeletalVis_0.1.1.tgz, r-oldrel (x86_64): SkeletalVis_0.1.1.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.