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Substitution matrices are important parameters in protein alignment algorithms. These matrices represent the likelihood that an amino acid will be substituted for another during mutation. This tool allows users to apply predefined and custom matrices and then explore the resulting alignments with interactive visualizations. 'SubVis' requires the availability of a web browser.
| Version: | 2.0.2 |
| Depends: | R (≥ 3.3.0), shiny, Biostrings |
| Suggests: | knitr, rmarkdown |
| Published: | 2017-05-23 |
| DOI: | 10.32614/CRAN.package.SubVis |
| Author: | Scott Barlowe |
| Maintainer: | Scott Barlowe <sabarlowe at email.wcu.edu> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | SubVis results |
| Reference manual: | SubVis.pdf |
| Vignettes: |
SubVis |
| Package source: | SubVis_2.0.2.tar.gz |
| Windows binaries: | r-devel: SubVis_2.0.2.zip, r-release: SubVis_2.0.2.zip, r-oldrel: SubVis_2.0.2.zip |
| macOS binaries: | r-release (arm64): SubVis_2.0.2.tgz, r-oldrel (arm64): SubVis_2.0.2.tgz, r-release (x86_64): SubVis_2.0.2.tgz, r-oldrel (x86_64): SubVis_2.0.2.tgz |
| Old sources: | SubVis archive |
Please use the canonical form https://CRAN.R-project.org/package=SubVis to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.