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An outcome-guided algorithm is developed to identify clusters of samples with similar characteristics and survival rate. The algorithm first builds a random forest and then defines distances between samples based on the fitted random forest. Given the distances, we can apply hierarchical clustering algorithms to define clusters. Details about this method is described in <https://github.com/luyouepiusf/SurvivalClusteringTree>.
| Version: | 1.1.1 |
| Imports: | Rcpp, survival, dplyr, grid, gridtext, formula.tools |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | knitr, rmarkdown, tinytest |
| Published: | 2024-05-24 |
| DOI: | 10.32614/CRAN.package.SurvivalClusteringTree |
| Author: | Lu You [aut, cre] (Created the package. Maintains the package.), Lauric Ferrat [aut] (Added functionality. Revised the package. Wrote the vignette.), Hemang Parikh [aut] (Checked and revised the package.), Yanan Huo [aut] (Revised plotting functions of the package.), Yuting Yang [aut] (Added some data frame features.), Jeffrey Krischer [ctb] (Supervisor the medical research. Coauthor of the medical manuscript.), Maria Redondo [ctb] (Principal investigators of the medical research. Coauthor of the medical manuscript.), Richard Oram [ctb] (Coauthor of the medical manuscript.), Andrea Steck [ctb] (Coauthor of the medical manuscript.) |
| Maintainer: | Lu You <lu.you at epi.usf.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | SurvivalClusteringTree results |
| Reference manual: | SurvivalClusteringTree.pdf |
| Vignettes: |
User Guide to SurvivalClusteringTree |
| Package source: | SurvivalClusteringTree_1.1.1.tar.gz |
| Windows binaries: | r-devel: SurvivalClusteringTree_1.1.1.zip, r-release: SurvivalClusteringTree_1.1.1.zip, r-oldrel: SurvivalClusteringTree_1.1.1.zip |
| macOS binaries: | r-release (arm64): SurvivalClusteringTree_1.1.1.tgz, r-oldrel (arm64): SurvivalClusteringTree_1.1.1.tgz, r-release (x86_64): SurvivalClusteringTree_1.1.1.tgz, r-oldrel (x86_64): SurvivalClusteringTree_1.1.1.tgz |
| Old sources: | SurvivalClusteringTree archive |
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