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TCRconvertR: Convert TCR Gene Names

Convert T Cell Receptor (TCR) gene names between the 10X Genomics, Adaptive Biotechnologies, and ImMunoGeneTics (IMGT) nomenclatures.

Version: 1.0
Imports: stats, utils, rappdirs
Suggests: knitr, rmarkdown, roxyglobals, testthat (≥ 3.0.0), mockery
Published: 2025-04-17
DOI: 10.32614/CRAN.package.TCRconvertR
Author: Emma Bishop ORCID iD [aut, cre, cph]
Maintainer: Emma Bishop <emmab5 at uw.edu>
BugReports: https://github.com/seshadrilab/tcrconvertr/issues
License: MIT + file LICENSE
URL: https://github.com/seshadrilab/tcrconvertr, https://seshadrilab.github.io/tcrconvertr/
NeedsCompilation: no
Materials: README NEWS
CRAN checks: TCRconvertR results

Documentation:

Reference manual: TCRconvertR.pdf
Vignettes: Get started (source, R code)
Using a custom species (source, R code)

Downloads:

Package source: TCRconvertR_1.0.tar.gz
Windows binaries: r-devel: TCRconvertR_1.0.zip, r-release: TCRconvertR_1.0.zip, r-oldrel: TCRconvertR_1.0.zip
macOS binaries: r-release (arm64): TCRconvertR_1.0.tgz, r-oldrel (arm64): TCRconvertR_1.0.tgz, r-release (x86_64): TCRconvertR_1.0.tgz, r-oldrel (x86_64): TCRconvertR_1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=TCRconvertR to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.