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We described a novel Topology-based pathway enrichment analysis, which integrated the global position of the nodes and the topological property of the pathways in Kyoto Encyclopedia of Genes and Genomes Database. We also provide some functions to obtain the latest information about pathways to finish pathway enrichment analysis using this method.
| Version: | 3.1.0 |
| Depends: | R (≥ 2.10), MESS, Matrix, foreach |
| Imports: | XML, RCurl, utils, igraph |
| Suggests: | geeM, geepack |
| Published: | 2017-06-25 |
| DOI: | 10.32614/CRAN.package.TPEA |
| Author: | Wei Jiang |
| Maintainer: | Wei Jiang <jiangwei at hrbmu.edu.cn> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| CRAN checks: | TPEA results |
| Reference manual: | TPEA.pdf |
| Package source: | TPEA_3.1.0.tar.gz |
| Windows binaries: | r-devel: TPEA_3.1.0.zip, r-release: TPEA_3.1.0.zip, r-oldrel: TPEA_3.1.0.zip |
| macOS binaries: | r-release (arm64): TPEA_3.1.0.tgz, r-oldrel (arm64): TPEA_3.1.0.tgz, r-release (x86_64): TPEA_3.1.0.tgz, r-oldrel (x86_64): TPEA_3.1.0.tgz |
| Old sources: | TPEA archive |
| Reverse imports: | scRNAtools |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.