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VIProDesign: A Comprehensive Tool for Protein Design

Provides tools for designing virus protein panels through sequence clustering and protein sequence analysis. The package includes functionality for filtering sequences, removing redundancy, identifying outliers, clustering sequences, and calculating entropy to evaluate clustering quality. A publication describing these methods is in preparation and will be added once available.

Version: 0.1.0
Imports: Biostrings, DECIPHER, cluster, pathviewr, dbscan, ape
Suggests: optparse
Published: 2025-05-02
DOI: 10.32614/CRAN.package.VIProDesign
Author: Tatsiana Bylund [aut, cre]
Maintainer: Tatsiana Bylund <tatsiana.bylund at nih.gov>
License: Apache License 2.0
NeedsCompilation: no
Materials: NEWS
CRAN checks: VIProDesign results

Documentation:

Reference manual: VIProDesign.pdf

Downloads:

Package source: VIProDesign_0.1.0.tar.gz
Windows binaries: r-devel: not available, r-release: VIProDesign_0.1.0.zip, r-oldrel: not available
macOS binaries: r-release (arm64): VIProDesign_0.1.0.tgz, r-oldrel (arm64): VIProDesign_0.1.0.tgz, r-release (x86_64): VIProDesign_0.1.0.tgz, r-oldrel (x86_64): VIProDesign_0.1.0.tgz

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.