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pathviewr: Wrangle, Analyze, and Visualize Animal Movement Data

Tools to import, clean, and visualize movement data, particularly from motion capture systems such as Optitrack's 'Motive', the Straw Lab's 'Flydra', or from other sources. We provide functions to remove artifacts, standardize tunnel position and tunnel axes, select a region of interest, isolate specific trajectories, fill gaps in trajectory data, and calculate 3D and per-axis velocity. For experiments of visual guidance, we also provide functions that use subject position to estimate perception of visual stimuli.

Version: 1.1.7
Imports: R.matlab, data.table (≥ 1.12.2), magrittr (≥ 1.5), dplyr (≥ 1.0.0), stringr (≥ 1.4.0), tibble (≥ 3.0.1), tidyr (≥ 1.1.0), fANCOVA, purrr (≥ 0.3.3), ggplot2 (≥ 3.4.0), tidyselect (≥ 1.1.0), cowplot, lubridate
Suggests: knitr, rmarkdown, testthat, anomalize, covr
Published: 2023-03-08
DOI: 10.32614/CRAN.package.pathviewr
Author: Vikram B. Baliga ORCID iD [aut, cre], Melissa S. Armstrong ORCID iD [aut], Eric R. Press ORCID iD [aut], Anne-Sophie Bonnet-Lebrun [rev], Marco Sciaini [rev]
Maintainer: Vikram B. Baliga <vbaliga87 at gmail.com>
BugReports: https://github.com/ropensci/pathviewr/issues/
License: GPL-3
URL: https://github.com/ropensci/pathviewr/, https://docs.ropensci.org/pathviewr/
NeedsCompilation: no
Citation: pathviewr citation info
Materials: README NEWS
CRAN checks: pathviewr results

Documentation:

Reference manual: pathviewr.pdf
Vignettes: Basics of data import and cleaning in pathviewr
Managing frame gaps with pathviewr
Estimating visual perceptions from tracking data

Downloads:

Package source: pathviewr_1.1.7.tar.gz
Windows binaries: r-devel: pathviewr_1.1.7.zip, r-release: pathviewr_1.1.7.zip, r-oldrel: pathviewr_1.1.7.zip
macOS binaries: r-release (arm64): pathviewr_1.1.7.tgz, r-oldrel (arm64): pathviewr_1.1.7.tgz, r-release (x86_64): pathviewr_1.1.7.tgz, r-oldrel (x86_64): pathviewr_1.1.7.tgz
Old sources: pathviewr archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.