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admixr: An Interface for Running 'ADMIXTOOLS' Analyses

An interface for performing all stages of 'ADMIXTOOLS' analyses (<https://reich.hms.harvard.edu/software>) entirely from R. Wrapper functions (D, f4, f3, etc.) completely automate the generation of intermediate configuration files, run 'ADMIXTOOLS' programs on the command-line, and parse output files to extract values of interest. This allows users to focus on the analysis itself instead of worrying about low-level technical details. A set of complementary functions for processing and filtering of data in the 'EIGENSTRAT' format is also provided.

Version: 0.9.1
Depends: R (≥ 3.6.0)
Imports: dplyr, magrittr, readr, stringr, tibble, stats, rlang, utils
Suggests: covr, glue, testthat, tidyr, knitr, rmarkdown, tidyverse
Published: 2020-07-03
DOI: 10.32614/CRAN.package.admixr
Author: Martin Petr ORCID iD [aut, cre]
Maintainer: Martin Petr <contact at bodkan.net>
BugReports: https://github.com/bodkan/admixr/issues
License: MIT + file LICENSE
URL: https://github.com/bodkan/admixr
NeedsCompilation: no
SystemRequirements: ADMIXTOOLS suite of command-line utilities for population genetics. See <https://reich.hms.harvard.edu/software> for the most recent installation instructions and further information.
Materials: README NEWS
CRAN checks: admixr results

Documentation:

Reference manual: admixr.pdf
Vignettes: Fitting qpAdm models with a 'rotation' strategy
Tutorial and basic overview of the admixr R package

Downloads:

Package source: admixr_0.9.1.tar.gz
Windows binaries: r-devel: admixr_0.9.1.zip, r-release: admixr_0.9.1.zip, r-oldrel: admixr_0.9.1.zip
macOS binaries: r-release (arm64): admixr_0.9.1.tgz, r-oldrel (arm64): admixr_0.9.1.tgz, r-release (x86_64): admixr_0.9.1.tgz, r-oldrel (x86_64): admixr_0.9.1.tgz

Reverse dependencies:

Reverse suggests: slendr

Linking:

Please use the canonical form https://CRAN.R-project.org/package=admixr to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.