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alphabetr: Algorithms for High-Throughput Sequencing of Antigen-Specific T Cells

Provides algorithms for frequency-based pairing of alpha-beta T cell receptors.

Version: 0.2.2
Imports: Rcpp (≥ 0.12.3), clue (≥ 0.3-50), dplyr (≥ 0.4.3), multicool (≥ 0.1-9)
LinkingTo: Rcpp
Suggests: knitr, rmarkdown
Published: 2017-01-28
DOI: 10.32614/CRAN.package.alphabetr
Author: Edward Lee [aut, cre]
Maintainer: Edward Lee <email.edwardlee at gmail.com>
BugReports: http://github.com/edwardslee/alphabetr
License: AGPL (≥ 3)
URL: http://github.com/edwardslee/alphabetr
NeedsCompilation: yes
CRAN checks: alphabetr results

Documentation:

Reference manual: alphabetr.pdf
Vignettes: Using \textsc{alphabetr} to determine $\alpha\beta$TCR pairs

Downloads:

Package source: alphabetr_0.2.2.tar.gz
Windows binaries: r-devel: alphabetr_0.2.2.zip, r-release: alphabetr_0.2.2.zip, r-oldrel: alphabetr_0.2.2.zip
macOS binaries: r-release (arm64): alphabetr_0.2.2.tgz, r-oldrel (arm64): alphabetr_0.2.2.tgz, r-release (x86_64): alphabetr_0.2.2.tgz, r-oldrel (x86_64): alphabetr_0.2.2.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=alphabetr to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.