ambiR: Calculate AZTI’s Marine Biotic Index
Calculate AZTI’s Marine Biotic Index - AMBI. The included list of benthic fauna species according to their sensitivity to pollution. Matching species in sample data to the list allows the calculation of fractions of individuals in the different sensitivity categories and thereafter the AMBI index. The Shannon Diversity Index H' and the Danish benthic fauna quality index DKI (Dansk Kvalitetsindeks) can also be calculated, as well as the multivariate M-AMBI index. Borja, A., Franco, J. ,Pérez, V. (2000) "A marine biotic index to establish the ecological quality of soft bottom benthos within European estuarine and coastal environments" <doi:10.1016/S0025-326X(00)00061-8>.
| Version: | 0.1.1 |
| Depends: | R (≥ 3.5) |
| Imports: | dplyr, tidyr, cli, magrittr, utils, stats |
| Suggests: | spelling, testthat (≥ 3.0.0), usethis, devtools, knitr, rmarkdown, ggplot2, scales |
| Published: | 2025-12-19 |
| DOI: | 10.32614/CRAN.package.ambiR |
| Author: | Ciarán J. Murray 
[aut, cre, cph],
Ángel Borja [aut],
Sarai Pouso [aut],
Iñigo Muxika
[aut],
Joxe Mikel Garmendia
[aut],
Steen Knudsen
[ctb],
GES4SEAS [fnd] (Grant Agreement 101059877 - GES4SEAS. The GES4SEAS
project has been approved under the HORIZON-CL6-2021-BIODIV-01-04
call: 'Assess and predict integrated impacts of cumulative direct
and indirect stressors on coastal and marine biodiversity,
ecosystems and their services'. Funded by the European Union.
Views and opinions expressed are however those of the authors only
and do not necessarily reflect those of the European Union or UK
Research and Innovation. Neither the European Union nor the
granting authority can be held responsible for them.) |
| Maintainer: | Ciarán J. Murray <cjm at niva-dk.dk> |
| BugReports: | https://github.com/NIVA-Denmark/ambiR/issues |
| License: | MIT + file LICENSE |
| URL: | https://niva-denmark.github.io/ambiR/, https://github.com/niva-denmark/ambiR/, https://github.com/NIVA-Denmark/ambiR |
| NeedsCompilation: | no |
| Language: | en-GB |
| Citation: | ambiR citation info |
| Materials: | README, NEWS |
| CRAN checks: | ambiR results |
Documentation:
| Reference manual: | ambiR.html , ambiR.pdf |
| Vignettes: |
AMBI figures (source, R code) Get started (source, R code) The AMBI index (source, R code) Interactive mode (source, R code) |
Downloads:
| Package source: | ambiR_0.1.1.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: ambiR_0.1.1.zip |
| macOS binaries: | r-release (arm64): ambiR_0.1.1.tgz, r-oldrel (arm64): ambiR_0.1.1.tgz, r-release (x86_64): ambiR_0.1.1.tgz, r-oldrel (x86_64): ambiR_0.1.1.tgz |
Linking:
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