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Provides methods for the processing of liquid chromatography-mass spectrometry (LC/MS) based metabolomics data, including adaptive tolerance level searching, non-parametric intensity grouping, the use of run filter to preserve weak signals, model-based estimation of peak intensities, and peak detection based on existing knowledge. Related references include Yu et al. (2009) <doi:10.1093/bioinformatics/btp291>, Liu et al. (2020) <doi:10.1038/s41598-020-70850-0>, Yu et al. (2014) <doi:10.1093/bioinformatics/btu430>, Yu et al. (2013) <doi:10.1021/pr301053d>.
| Version: | 6.8.3 |
| Depends: | R (≥ 2.10), foreach, iterators, ROCR, Rcpp, doParallel |
| Imports: | rgl, mzR, e1071, gbm, randomForest, MASS, splines, ROCS |
| LinkingTo: | Rcpp |
| Suggests: | msdata |
| Published: | 2025-08-19 |
| DOI: | 10.32614/CRAN.package.apLCMS |
| Author: | Tianwei Yu [aut, cre] |
| Maintainer: | Tianwei Yu <yutianwei at cuhk.edu.cn> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| CRAN checks: | apLCMS results [issues need fixing before 2025-09-02] |
| Reference manual: | apLCMS.html , apLCMS.pdf |
| Package source: | apLCMS_6.8.3.tar.gz |
| Windows binaries: | r-devel: apLCMS_6.8.3.zip, r-release: apLCMS_6.8.3.zip, r-oldrel: apLCMS_6.8.3.zip |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available |
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These binaries (installable software) and packages are in development.
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