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A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system. The only parameter that limits the number of chips that can be processed is the amount of available disk space. The Aroma Framework has successfully been used in studies to process tens of thousands of arrays. This package has actively been used since 2006.
| Version: | 3.2.2 |
| Depends: | R (≥ 3.2.0), R.utils (≥ 2.9.0), aroma.core (≥ 3.2.0) |
| Imports: | methods, R.methodsS3 (≥ 1.7.1), R.oo (≥ 1.23.0), R.cache (≥ 0.14.0), R.devices (≥ 2.16.1), R.filesets (≥ 2.13.0), aroma.apd (≥ 0.6.0), MASS, splines, matrixStats (≥ 0.55.0), listenv, future |
| Suggests: | DBI (≥ 1.0.0), gsmoothr (≥ 0.1.7), RColorBrewer (≥ 1.1-2), Biobase (≥ 2.28.0), BiocGenerics (≥ 0.14.0), affxparser (≥ 1.40.0), affy (≥ 1.46.0), affyPLM (≥ 1.44.0), aroma.light (≥ 2.4.0), gcrma (≥ 2.40.0), limma (≥ 3.24.1), oligo (≥ 1.32.0), oligoClasses (≥ 1.30.0), pdInfoBuilder (≥ 1.32.0), preprocessCore (≥ 1.28.0), AffymetrixDataTestFiles, dChipIO (≥ 0.1.1) |
| Published: | 2024-02-18 |
| DOI: | 10.32614/CRAN.package.aroma.affymetrix |
| Author: | Henrik Bengtsson [aut, cre, cph], James Bullard [ctb], Kasper Hansen [ctb], Pierre Neuvial [ctb], Elizabeth Purdom [ctb], Mark Robinson [ctb], Ken Simpson [ctb] |
| Maintainer: | Henrik Bengtsson <henrikb at braju.com> |
| BugReports: | https://github.com/HenrikBengtsson/aroma.affymetrix/issues |
| License: | LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)] |
| URL: | https://www.aroma-project.org/, https://github.com/HenrikBengtsson/aroma.affymetrix |
| NeedsCompilation: | no |
| Citation: | aroma.affymetrix citation info |
| Materials: | NEWS |
| CRAN checks: | aroma.affymetrix results |
| Reference manual: | aroma.affymetrix.pdf |
| Package source: | aroma.affymetrix_3.2.2.tar.gz |
| Windows binaries: | r-devel: aroma.affymetrix_3.2.2.zip, r-release: aroma.affymetrix_3.2.2.zip, r-oldrel: aroma.affymetrix_3.2.2.zip |
| macOS binaries: | r-release (arm64): aroma.affymetrix_3.2.2.tgz, r-oldrel (arm64): aroma.affymetrix_3.2.2.tgz, r-release (x86_64): aroma.affymetrix_3.2.2.tgz, r-oldrel (x86_64): aroma.affymetrix_3.2.2.tgz |
| Old sources: | aroma.affymetrix archive |
| Reverse depends: | ACNE, TIN |
| Reverse imports: | PECA |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.