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autothresholdr: An R Port of the 'ImageJ' Plugin 'Auto Threshold'

Algorithms for automatically finding appropriate thresholds for numerical data, with special functions for thresholding images. Provides the 'ImageJ' 'Auto Threshold' plugin functionality to R users. See <https://imagej.net/plugins/auto-threshold> and Landini et al. (2017) <doi:10.1111/jmi.12474>.

Version: 1.4.2
Depends: R (≥ 3.5)
Imports: checkmate (≥ 1.9.3), ijtiff (≥ 2.2), magrittr (≥ 1.5), purrr, Rcpp (≥ 1.0.11), rlang (≥ 0.3.3), stats, strex (≥ 1.4.1), stringr (≥ 1.4)
LinkingTo: Rcpp (≥ 1.0.11)
Suggests: covr, dplyr, ggplot2, knitr, rmarkdown, spelling, styler (≥ 1.3.2), testthat (≥ 3.0), utils
Published: 2023-12-13
DOI: 10.32614/CRAN.package.autothresholdr
Author: Rory Nolan ORCID iD [aut, cre, trl], Luis Alvarez ORCID iD [ctb], Sergi Padilla-Parra ORCID iD [ctb, ths], Gabriel Landini ORCID iD [ctb, cph]
Maintainer: Rory Nolan <rorynoolan at gmail.com>
BugReports: https://github.com/rorynolan/autothresholdr/issues
License: GPL-3
URL: https://rorynolan.github.io/autothresholdr/, https://github.com/rorynolan/autothresholdr#readme
NeedsCompilation: yes
Language: en-US
Citation: autothresholdr citation info
Materials: NEWS
CRAN checks: autothresholdr results

Documentation:

Reference manual: autothresholdr.pdf
Vignettes: Finding Thresholds
Thresholding Image Stacks
Thresholding Images

Downloads:

Package source: autothresholdr_1.4.2.tar.gz
Windows binaries: r-devel: autothresholdr_1.4.2.zip, r-release: autothresholdr_1.4.2.zip, r-oldrel: autothresholdr_1.4.2.zip
macOS binaries: r-release (arm64): autothresholdr_1.4.2.tgz, r-oldrel (arm64): autothresholdr_1.4.2.tgz, r-release (x86_64): autothresholdr_1.4.2.tgz, r-oldrel (x86_64): autothresholdr_1.4.2.tgz
Old sources: autothresholdr archive

Reverse dependencies:

Reverse imports: coveR2, detrendr, hemispheR, nandb
Reverse suggests: rcaiman

Linking:

Please use the canonical form https://CRAN.R-project.org/package=autothresholdr to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.