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Implements the chain binomial model for analysis of infectious disease data. Contains functions for calculating probabilities of the final size of infectious disease outbreaks using the method from D. Ludwig (1975) <doi:10.1016/0025-5564(75)90119-4> and for outbreaks that are not concluded, from Lindstrøm et al. (2024) <doi:10.48550/arXiv.2403.03948>. The package also contains methods for estimation and regression analysis of secondary attack rates.
| Version: | 0.1.5 |
| Depends: | R (≥ 3.5.0) |
| Imports: | generics |
| Suggests: | testthat (≥ 3.0.0), numDeriv (≥ 2016.8-1.1), dplyr (≥ 1.1.3), tidyr (≥ 1.3.0), tibble, knitr, rmarkdown |
| Published: | 2024-05-27 |
| DOI: | 10.32614/CRAN.package.chainbinomial |
| Author: | Jonas Christoffer Lindstrøm [aut, cre] |
| Maintainer: | Jonas Christoffer Lindstrøm <jonaslindstrom88 at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | chainbinomial results |
| Reference manual: | chainbinomial.pdf |
| Vignettes: |
Analyzing chain data with glm Introduction to the chainbinomial package |
| Package source: | chainbinomial_0.1.5.tar.gz |
| Windows binaries: | r-devel: chainbinomial_0.1.5.zip, r-release: chainbinomial_0.1.5.zip, r-oldrel: not available |
| macOS binaries: | r-release (arm64): chainbinomial_0.1.5.tgz, r-oldrel (arm64): chainbinomial_0.1.5.tgz, r-release (x86_64): chainbinomial_0.1.5.tgz, r-oldrel (x86_64): chainbinomial_0.1.5.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.