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Flexible framework for coalescent analyses in R. It includes a main function running the MCMC algorithm, auxiliary functions for tree rearrangement, and some functions to compute population genetic parameters. Extended description can be found in Paradis (2020) <doi:10.1201/9780429466700>. For details on the MCMC algorithm, see Kuhner et al. (1995) <doi:10.1093/genetics/140.4.1421> and Drummond et al. (2002) <doi:10.1093/genetics/161.3.1307>.
| Version: | 0.4-4 |
| Depends: | ape, coda, lattice |
| Imports: | Matrix, phangorn, splines, stats, utils |
| Published: | 2022-04-22 |
| DOI: | 10.32614/CRAN.package.coalescentMCMC |
| Author: | Emmanuel Paradis [aut, cre, cph] |
| Maintainer: | Emmanuel Paradis <Emmanuel.Paradis at ird.fr> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| Citation: | coalescentMCMC citation info |
| Materials: | NEWS |
| In views: | Bayesian |
| CRAN checks: | coalescentMCMC results |
| Reference manual: | coalescentMCMC.pdf |
| Vignettes: |
Coalescent Models Running coalescentMCMC |
| Package source: | coalescentMCMC_0.4-4.tar.gz |
| Windows binaries: | r-devel: coalescentMCMC_0.4-4.zip, r-release: coalescentMCMC_0.4-4.zip, r-oldrel: coalescentMCMC_0.4-4.zip |
| macOS binaries: | r-release (arm64): coalescentMCMC_0.4-4.tgz, r-oldrel (arm64): coalescentMCMC_0.4-4.tgz, r-release (x86_64): coalescentMCMC_0.4-4.tgz, r-oldrel (x86_64): coalescentMCMC_0.4-4.tgz |
| Old sources: | coalescentMCMC archive |
Please use the canonical form https://CRAN.R-project.org/package=coalescentMCMC to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.